In Knaperanna farm barn in the South Coast region close to Minken Bunker, a seeker spawned, then a green runner, than a second green runner. I was upstairs, and all the doors where closed apart from a high first level door without ramp. I was shooting at a machine down in the yard. The machines did not enter, they SPAWNED inside in my back. I would accept a seeker entering a high large window-door but two runners ?
It is the first time I see this. Is it intended or a bug ?
Probably not intended 
If you could add a screenshot of the map with the coordinates of the location on the map that would be great!
Done. Please don’t ask me to try to reproduce the case, it was quite a scaring experience for me 
Have you not had any hunters fall through the ceiling while you’re in a bunker? if not, you have something to look forward to that is a bit more scary than the runners!
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I am just going to Minken Bunker. First, I am carefully reading the Minken quest bug reports to avoid any possible mission breaking. I hope nobody will fall down during my stay inside. But wait, hunters are higher than bunker corridors, how can they move inside without their head stuck in the ceiling ?
You’ll find out for yourself probably, like I said before none of that is intended
I had those many times. Always fun, especially when they come with their entourage of a pack of dogs.
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Had it happen to me last night. In the last bunker of the warboard list. I am fighting a hunter a ways down one of the corridors with a dead end behind me and about 10ft of open space between me and the wall behind that is the end of the corridor. All of a sudden I am taking hits from behind, I turn around and two military runners are standing there. There was no way for them to get there, no way past me, but there they were. Shouldn’t happen.
The first time I encountered that was when doing a loot run at Uttern some time ago. I had hunters and dogs tracking me from outside the bunker as I went about my business. I went down the spiral staircase to loot the lower level. On my way back up, 2 hunters were stuck right in the staircase. I managed to kill them, but their wrecks were blocking the stairs, so I had to fast travel back to the safe room.
Since then I’ve had many instances of hunters and runners clipping through bunker walls to get to me.
@gthib and @Crunchmeister
Thanks for your feedback. Yesterday in Minken bunker I met three fast spawned green runners, two of them were blocked in a spiral staircase, as for @Crunchmeister and were easy to kill, the last one spawned close to me in a deadend already cleared and killed me twice by a very efficient melee bumping attack. 
I have never seen this spawns before the May update, have you?
By the way, what do you mean by “clipping through the wall” (I am not good in English) completely jumping through or just passing some part like a head or a weapon?